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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs9309473 1 rs62151652 chr2:73700131 ALMS1P chr2:73872046-73912692:+ 0.59 4.56 1.53E-5 Metabolite levels
THYM cis rs3772130 1 rs62268732 chr3:121370455 IQCB1 chr3:121488610-121553926:- 0.45 4.18 6.42E-5 Cognitive performance
THYM cis rs10935120 1 rs62269547 chr3:134214042 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs62269547 chr3:134214042 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs10935120 1 rs62271513 chr3:134298412 ANAPC13 chr3:134196547-134204865:- -0.57 -7.67 1.5E-11 Height
THYM cis rs10935120 1 rs62271513 chr3:134298412 CEP63 chr3:134204575-134293852:+ -0.41 -6.04 2.96E-8 Height
THYM cis rs10935120 1 rs62271514 chr3:134298554 ANAPC13 chr3:134196547-134204865:- -0.57 -7.67 1.5E-11 Height
THYM cis rs10935120 1 rs62271514 chr3:134298554 CEP63 chr3:134204575-134293852:+ -0.41 -6.04 2.96E-8 Height
THYM cis rs10935120 1 rs62271515 chr3:134300507 ANAPC13 chr3:134196547-134204865:- 0.55 7.48 3.7E-11 Height
THYM cis rs10935120 1 rs62271515 chr3:134300507 CEP63 chr3:134204575-134293852:+ 0.43 6.36 7.09E-9 Height
THYM cis rs568617 1 rs641018 chr11:65655393 CTSW chr11:65647284-65651212:+ -0.59 -7.12 2.04E-10 Crohn's disease
THYM cis rs568617 1 rs641018 chr11:65655393 SNX32 chr11:65601410-65621170:+ 0.55 5.17 1.29E-6 Crohn's disease
THYM cis rs4660306 1 rs6429567 chr1:45956700 CCDC163P chr1:45960581-45965646:- -0.86 -14.78 2.3E-26 Homocysteine levels
THYM cis rs4660306 1 rs6429569 chr1:46001330 CCDC163P chr1:45960581-45965646:- -0.76 -11.88 1.72E-20 Homocysteine levels
THYM cis rs2275426 1 rs6429582 chr1:46321843 CCDC163P chr1:45960581-45965646:- 0.49 5.69 1.38E-7 Body mass index